Diff_perturb_effect: Calculating perturbation effect difference under different...
In bm2-lab/MASCOT: Model-based Understanding of SIngle-cell CRISPR screening

Diff_perturb_effect

R Documentation

Calculating perturbation effect difference under different experimental conditions.

Usage

Diff_perturb_effect(rank_overall_condition_1, rank_overall_condition_2, fold_change = 2, plot = FALSE, plot_path = "./perturbation_effect_difference.pdf", output = FALSE,file_path = "./perturbation_effect_difference.txt")

Arguments

`rank_overall_condition_1`	A dataframe. The overall perturbation effect ranking list, under condition 1. It can be obtained bu function "Rank_overall()" in this package.
`rank_overall_condition_2`	A dataframe. The overall perturbation effect ranking list, under condition 2. It can be obtained bu function "Rank_overall()" in this package.
`fold_change`	The cutoff to show the difference. 2 by default.
`plot`	FALSE by default. If TRUE, plot the graph.
`plot_path`	The save path of the graph you plot. It works only when the parameter "plot" is TRUE.
`output`	FALSE by default. If it is TRUE, then the result will be outputted to a file.
`file_path`	The save path of the result. It works only when the parameter "output" is TRUE.