Input_preprocess_10X: The preprocess of input data generated with 10X genomics.
In bm2-lab/MASCOT: Model-based Understanding of SIngle-cell CRISPR screening
Input_preprocess_10X R Documentation
The preprocess of input data generated with 10X genomics.
Description
For convenience, if the data is generated by 10X genomics, user can use this function to input them. Of course, you can still handle the data to the standard type, then use "Input_preprocess()" function as well.
Usage
Input_preprocess_10X(directory)
Arguments
directory
This is a directory, including "genes.tsv", "barcodes.tsv", "matrix.mtx", "cbc_gbc_dict.tsv", "cbc_gbc_dict_grna.tsv".
Value
expression_profile
A dataframe showing the expression profile.
perturb_information
A character vector showing the information of sample.
Author(s)
Bin Duan
bm2-lab/MASCOT documentation built on April 19, 2024, 4:35 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| Input_preprocess_10X | R Documentation |
The preprocess of input data generated with 10X genomics.
Description
For convenience, if the data is generated by 10X genomics, user can use this function to input them. Of course, you can still handle the data to the standard type, then use "Input_preprocess()" function as well.
Usage
Input_preprocess_10X(directory)
Arguments
directory |
This is a directory, including "genes.tsv", "barcodes.tsv", "matrix.mtx", "cbc_gbc_dict.tsv", "cbc_gbc_dict_grna.tsv". |
Value
expression_profile |
A dataframe showing the expression profile. |
perturb_information |
A character vector showing the information of sample. |
Author(s)
Bin Duan
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.