Rank_overall: Calculating the overall perturbation effect ranking list.
In bm2-lab/MASCOT: Model-based Understanding of SIngle-cell CRISPR screening

Rank_overall

R Documentation

Calculating the overall perturbation effect ranking list.

Description

MUSIC prioritizes the gene perturbation effect either as an overall perturbation effect on the cells, or in a functional topic-specific way. Here, the function calcultes and obtains the overall perturbation effect ranking list.

Usage

Rank_overall(distri_diff, offTarget_hash = hash(), output = FALSE, file_path = "./rank_overall.txt")

Arguments

`distri_diff`	A dataframe showing the topic distribution difference between case and control which can obtain from "Diff_topic_distri()" in this package.
`offTarget_hash`	A hash table showing offtarget information which can obtain from "Get_Offtarget()". The default is a null hash.
`output`	FALSE by default. If it is TRUE, then the result will be outputted to a file.
`file_path`	The save path of the result. It works only when the parameter "output" is TRUE.