Rank_overall | R Documentation |
MUSIC prioritizes the gene perturbation effect either as an overall perturbation effect on the cells, or in a functional topic-specific way. Here, the function calcultes and obtains the overall perturbation effect ranking list.
Rank_overall(distri_diff, offTarget_hash = hash(), output = FALSE, file_path = "./rank_overall.txt")
distri_diff |
A dataframe showing the topic distribution difference between case and control which can obtain from "Diff_topic_distri()" in this package. |
offTarget_hash |
A hash table showing offtarget information which can obtain from "Get_Offtarget()". The default is a null hash. |
output |
FALSE by default. If it is TRUE, then the result will be outputted to a file. |
file_path |
The save path of the result. It works only when the parameter "output" is TRUE. |
A dataframe, the overall perturbation effect ranking list.
Bin Duan
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