Diff_topic_distri: Calcualting topic distribution difference between case and...
In bm2-lab/MASCOT: Model-based Understanding of SIngle-cell CRISPR screening
Diff_topic_distri R Documentation
Calcualting topic distribution difference between case and control.
Usage
Diff_topic_distri(model, perturb_information, plot = FALSE, plot_path = "./distribution_of_topic.pdf")
Arguments
model
Object of class "LDA" with the optimal topic number selected.
perturb_information
A character vector showing the perturbation of each sample after all the filterings.
plot
FALSE by default. If TRUE, plot the graph.
plot_path
The save path of the graph you plot. It works only when the parameter "plot" is TRUE.
Value
A dataframe.
Author(s)
Bin Duan
bm2-lab/MASCOT documentation built on April 19, 2024, 4:35 p.m.
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| Diff_topic_distri | R Documentation |
Calcualting topic distribution difference between case and control.
Usage
Diff_topic_distri(model, perturb_information, plot = FALSE, plot_path = "./distribution_of_topic.pdf")
Arguments
model |
Object of class "LDA" with the optimal topic number selected. |
perturb_information |
A character vector showing the perturbation of each sample after all the filterings. |
plot |
FALSE by default. If TRUE, plot the graph. |
plot_path |
The save path of the graph you plot. It works only when the parameter "plot" is TRUE. |
Value
A dataframe.
Author(s)
Bin Duan
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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