A sleek package to deal with sequences in R. Joint O'Meara lab project, created in a hackathon.
To install it:
library(devtools)
install_github(bomeara/sleq)
seqalignment
class: can be subset with brackets like a character matrix, but internally has slots for info on codon position, gene name, and data type. Tested.This will be developed at an inhouse hackathon on Oct. 12, 2015. A secondary objective is to make useful code, but the primary objectives are learning and lab bonding. To that end:
Some notable features of the sleq
package:
Sequences are stored as character matrices, thus easy to subset.
However, we also have a seqalignment
class. It can be indexed using []
as with a character matrix, but actually stores this internally. The object also has info about gene locations and sequence type.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.