GetNCBITaxa: Create a data.frame with NCBI taxon id, name, and what kind...
In bomeara/sleq: sleq
Description
Usage
Arguments
Details
Value
Description
Create a data.frame with NCBI taxon id, name, and what kind of object this is
Usage
1
GetNCBITaxa(taxdir = tempdir(), name.type = "scientific name")
Arguments
taxdir
The path to the folder that has the unziped nodes.dmp from NCBI
name.type
NCBI includes common names, scientific names, etc. Specify NULL if you want to return all names
Details
This is essentially a wrapper for CHNOSZ' functions
Value
A data.frame with taxon ids and names
bomeara/sleq documentation built on May 12, 2019, 11:36 p.m.
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Description Usage Arguments Details Value
Description
Create a data.frame with NCBI taxon id, name, and what kind of object this is
Usage
1 | GetNCBITaxa(taxdir = tempdir(), name.type = "scientific name")
|
Arguments
taxdir |
The path to the folder that has the unziped nodes.dmp from NCBI |
name.type |
NCBI includes common names, scientific names, etc. Specify NULL if you want to return all names |
Details
This is essentially a wrapper for CHNOSZ' functions
Value
A data.frame with taxon ids and names
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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