TossTaxa: Toss taxa (rows) for which coverage across all genes is below...
In bomeara/sleq: sleq
Description
Usage
Arguments
Value
See Also
Description
Toss taxa (rows) for which coverage across all genes is below a user-defined threshold.
Usage
1
Arguments
seq
A character matrix or seqalignment object
threshold
A proportion deemed acceptable to keep a taxon
Value
A character matrix or seqalignment object
See Also
CleanSeqs for removal of nucleotide sites with low coverage
bomeara/sleq documentation built on May 12, 2019, 11:36 p.m.
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Description Usage Arguments Value See Also
Description
Toss taxa (rows) for which coverage across all genes is below a user-defined threshold.
Usage
1 |
Arguments
seq |
A character matrix or seqalignment object |
threshold |
A proportion deemed acceptable to keep a taxon |
Value
A character matrix or seqalignment object
See Also
CleanSeqs for removal of nucleotide sites with low coverage
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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