TossTaxa: Toss taxa (rows) for which coverage across all genes is below...

Description Usage Arguments Value See Also

Description

Toss taxa (rows) for which coverage across all genes is below a user-defined threshold.

Usage

1
TossTaxa(seq, threshold = 0.5)

Arguments

seq

A character matrix or seqalignment object

threshold

A proportion deemed acceptable to keep a taxon

Value

A character matrix or seqalignment object

See Also

CleanSeqs for removal of nucleotide sites with low coverage


bomeara/sleq documentation built on May 12, 2019, 11:36 p.m.