PurgeBadSites: Removes poorly aligned sequences using a sliding window
In bomeara/sleq: sleq
Description
Removes poorly aligned sequences using a sliding window
Usage
1
PurgeBadSites(sequences, width = 6, threshold = 4, by.gene = TRUE)
Arguments
sequences
matrix of sequences from an object of class seqalignment
width
integer for the width of the sliding window
threshold
value for the cutoof of average number of bases needed for removal from alignment
bomeara/sleq documentation built on May 12, 2019, 11:36 p.m.
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Description
Removes poorly aligned sequences using a sliding window
Usage
1 | PurgeBadSites(sequences, width = 6, threshold = 4, by.gene = TRUE)
|
Arguments
sequences |
matrix of sequences from an object of class seqalignment |
width |
integer for the width of the sliding window |
threshold |
value for the cutoof of average number of bases needed for removal from alignment |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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