Description Usage Arguments Examples
Removes sites that contain a certain percentage of missing data across taxa
1 |
seq |
A character matrix or seqalignment object |
seq.type |
The type of sequences contained in the alignment. |
cutoff |
The proportion of non-ambiguous data present to trim from the alignment. |
1 2 3 4 5 6 7 8 9 | ## Not run:
test.sequences <- read.alignment(file = system.file("sequences/test.phylip",
package = "seqinr"), format = "phylip")
test.sequences.clean <- CleanSeqs(test.sequences, seq.type="dna", cutoff=0.5)
test.sequences <- as.matrix(read.alignment(file = system.file("sequences/test.phylip",
package = "seqinr"), format = "phylip"))
test.sequences.clean <- CleanSeqs(test.sequences, seq.type="dna", cutoff=0.5)
## End(Not run)
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