SeqLengthNoGaps: Provides length a sequence for each taxon in an alignment...
In bomeara/sleq: sleq
Description
Usage
Arguments
Examples
Description
Provides length a sequence for each taxon in an alignment that is not a gap.
Usage
1
SeqLengthNoGaps(seq, seq.type = "dna")
Arguments
seq
A character matrix or seqalignment object.
seq.type
A value that indicates the type of sequences.
Examples
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## Not run:
test.sequences <- ((file = system.file("sequences/test.phylip",
package = "seqinr"), format = "fasta"))
test.sequences.lengths <- SeqLengthNoGaps(test.sequences, seq.typ="dna")
## End(Not run)
bomeara/sleq documentation built on May 12, 2019, 11:36 p.m.
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Description Usage Arguments Examples
Description
Provides length a sequence for each taxon in an alignment that is not a gap.
Usage
1 | SeqLengthNoGaps(seq, seq.type = "dna")
|
Arguments
seq |
A character matrix or seqalignment object. |
seq.type |
A value that indicates the type of sequences. |
Examples
1 2 3 4 5 6 | ## Not run:
test.sequences <- ((file = system.file("sequences/test.phylip",
package = "seqinr"), format = "fasta"))
test.sequences.lengths <- SeqLengthNoGaps(test.sequences, seq.typ="dna")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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