API for bomeara/treevo
Using ABC to Understand Trait Evolution
| Global functions | |
|---|---|
| EstimateMaxForce | Source code |
| EstimateRate | Source code |
| ExponentiallyDecayingPushExtrinsic | Man page Source code |
| ForceOptimality | Source code |
| GetBrownianSDRate | Source code |
| GetExpPushPriors | Source code |
| GetGenomeDuplicationPriors | Source code |
| MultiStepPush | Source code |
| OneStepPush | Source code |
| PLSRejection | Source code |
| PLSTransform | Man page Source code |
| SingleParameterPLSDistanceSquared | Source code |
| SingleParameterPLSDistanceSquaredFixedPLS | Source code |
| TreEvo | Man page |
| TreEvo-package | Man page |
| Treevo | Man page |
| abcDistance | Source code |
| abcmodels.extrinsic | Man page |
| abcmodels.intrinsic | Man page |
| abcparticle | Source code |
| abctaxon | Source code |
| ancStateExample | Man page |
| autoregressiveIntrinsic | Man page Source code |
| autoregressiveIntrinsicTimeSlices | Man page Source code |
| autoregressiveIntrinsicTimeSlicesConstantMean | Man page Source code |
| autoregressiveIntrinsicTimeSlicesConstantSigma | Man page Source code |
| bayesCoverageProb | Source code |
| boostNsim | Source code |
| boundaryIntrinsic | Man page Source code |
| boundaryMaxIntrinsic | Man page Source code |
| boundaryMinIntrinsic | Man page Source code |
| boxcoxTransformation | Man page Source code |
| boxcoxTransformationMatrix | Man page |
| brownianIntrinsic | Man page Source code |
| compareListIPD | Man page Source code |
| createAbcTaxonFromHeightsRow | Source code |
| distanceByRow | Source code |
| doRun | Man page |
| doRun_prc | Man page Source code |
| doRun_rej | Man page Source code |
| doSimulation | Man page Source code |
| doSimulationInternal | Source code |
| everyoneDisplacementExtrinsic | Man page Source code |
| extrinsicModels | Man page |
| genRateExample | Man page |
| genomeDuplicationAttraction | Source code |
| genomeDuplicationAttractionLogScale | Source code |
| genomeDuplicationPartialDoublingLogScale | Source code |
| getBM | Source code |
| getBMRatePrior | Man page Source code |
| getDelta | Source code |
| getFreeVector | Source code |
| getHPDcoda | Source code |
| getLambda | Source code |
| getOU | Source code |
| getPriorList | Source code |
| getSimulationSplits | Source code |
| getSummary | Source code |
| getSummaryMeans | Source code |
| getTaxonDFWithPossibleExtinction | Source code |
| getTraitBoundsFPK | Man page Source code |
| getTraitIntervalDensityFPK | Source code |
| getUnivariatePosteriorCurve | Man page Source code |
| getUnivariatePriorCurve | Man page Source code |
| getWhite | Source code |
| getlnTransitionProb | Source code |
| highestDensityInterval | Man page Source code |
| initialSimsPRC | Source code |
| initializeStatesFromMatrices | Source code |
| interparticleDistance | Source code |
| intrinsicModels | Man page |
| landscapeFPK_Intrinsic | Man page Source code |
| makeQuiet | Source code |
| matchTreeWithTrait | Source code |
| maxBoundaryAutoregressiveIntrinsic | Man page Source code |
| methodsPLS | Man page |
| minBoundaryAutoregressiveIntrinsic | Man page Source code |
| multiOptimaIntrinsic | Man page Source code |
| mutateState | Source code |
| mutateStates | Source code |
| nearestNeighborDisplacementExtrinsic | Man page Source code |
| nullExtrinsic | Man page Source code |
| nullIntrinsic | Man page Source code |
| pairwiseESS | Man page Source code |
| pairwiseKS | Man page Source code |
| parallelSimulateWithPriors | Man page Source code |
| parentOffspringPlots | Man page Source code |
| plotABC_3D | Man page Source code |
| plotPosteriors | Man page Source code |
| plotPrior | Man page Source code |
| plotPriorPost | Man page |
| plotUnivariatePosteriorVsPrior | Man page Source code |
| plot_landscapeFPK_model | Man page Source code |
| postRunSimulateFromMeans | Source code |
| potentialFunFPK | Source code |
| pullFromPrior | Source code |
| qexpOptimality | Source code |
| registerMulticoreEnv | Source code |
| resultsBMExample | Man page |
| resultsBoundExample | Man page |
| returnPLSModel | Man page Source code |
| rnormFastZig | Source code |
| setupMulticore | Source code |
| simCharExample | Man page |
| simParticlePRC | Source code |
| simParticlePRCNotParallel | Source code |
| simParticlePRCParallel | Source code |
| simPhyExample | Man page |
| simRunExample | Man page |
| simulateWithPriors | Man page Source code |
| solnfreq | Source code |
| startsWithMultiple | Source code |
| stopMulticore | Source code |
| sumLogTranProb | Source code |
| summarizePosterior | Man page Source code |
| summarizeTaxonStates | Source code |
| summaryStatsLong | Source code |
| testMultivarOutlierHDR | Man page Source code |
| treevo | Man page |
| varyingBoundariesFixedSigmaIntrinsic | Source code |
| varyingBoundariesVaryingSigmaIntrinsic | Source code |
