API for brendanf/tzara
Cluster long amplicons using dada2 denoising on variable regions
| Global functions | |
|---|---|
| .onLoad | Source code |
| add_derep_names | Man page Source code |
| add_derep_names.derep | Man page Source code |
| add_derep_names.list | Man page Source code |
| assemble_region_table | Source code |
| cluster_consensus | Man page Source code |
| cluster_consensus.XStringSet | Man page Source code |
| cluster_consensus.character | Man page Source code |
| combine_bigmaps | Man page Source code |
| combine_derep | Man page Source code |
| dadamap | Man page Source code |
| dadamap.derep | Source code |
| dadamap.list | Man page Source code |
| detect_format | Source code |
| do_extract_region | Source code |
| extract_region | Man page Source code |
| extract_region.ShortRead | Man page |
| extract_region.XStringSet | Man page |
| extract_region.character | Man page Source code |
| extract_region.list | Man page Source code |
| find_all_region_chimeras | Man page |
| find_region_chimeras | Man page |
| flog_toc | Source code |
| get_id | Source code |
| get_id.ShortRead | Source code |
| has_alphabet | Man page Source code |
| is_gzname | Source code |
| is_string_or_missing | Source code |
| map_or_consensus | Man page |
| map_to_best_asv | Man page |
| odseq | Source code |
| output_spec | Source code |
| qsDNAss_to_sreadq | Source code |
| quality_profile | Man page |
| reconstruct | Man page Source code |
| reconstruct_region | Source code |
| seqhash | Man page Source code |
| seqhash.XStringSet | Man page Source code |
| seqhash.character | Man page Source code |
| sreadq_to_qsDNAss | Source code |
| str_modify | Source code |
| summarize_sread | Man page Source code |
| summarize_sread.ShortReadQ | Source code |
| summarize_sread.list | Source code |
| tzara | Man page |
| tzara-package | Man page |
| tzara_sample | Man page |
| write_region | Source code |
| write_region.QualityScaledXStringSet | Source code |
| write_region.ShortRead | Source code |
| write_region.XStringSet | Source code |
