Man pages for broadinstitute/CommunityAMARETTO
CommunityAMARETTO: A Computational Tool for the Discovery of Shared and Distinct Regulatory Mechanisms Across Biological Systems
| cAMARETTO_ColorOneModule | cAMARETTO_ColorOneModule Creates a network with one (or none)... |
| cAMARETTO_ExportResults | cAMARETTO_ExportResults |
| cAMARETTO_heatmap | cAMARETTO_heatmap Constructs a heatmap with the comparison... |
| cAMARETTO_HTML_Read | Title cAMARETTO_HTML_Read |
| cAMARETTO_HTMLreport | cAMARETTO_HTMLreport Creates a HTMLreport for the community... |
| cAMARETTO_IdentifyCom | cAMARETTO_IdentifyCom |
| cAMARETTO_InformationTable | cAMARETTO_InformationTable |
| cAMARETTO_ModuleNetwork | cAMARETTO_ModuleNetwork Creates a module network. |
| cAMARETTO_Read | cAMARETTO_Read Reads the AMARETTOinit and AMARETTOresults... |
| cAMARETTO_Results | cAMARETTO_Results To initiate the community AMARETTO this... |
| CCLE_Liver_data | CCLE_Liver_data |
| CommunityHyperLink | CommunityHyperLink |
| CommunityModuleTableCreate | CommunityModuleTableCreate |
| ComRunModGenInfo | ComRunModGenInfo |
| create_hgt_datatable | create_hgt_datatable |
| CreateHyperGeoTestAll | CreateHyperGeoTestAll |
| CreatePhenotypeTable | CreatePhenotypeTable |
| drivers_communities_summary | Title drivers_communities_summary |
| DriversSharedTbl | DriversSharedTbl |
| ExtractGenesInfo | Title ExtractGenesInfo |
| Extract_Genes_Modules_All | Title Extract_Genes_Modules_All |
| GmtFromModules | GmtFromModules |
| HGTGeneEnrichmentList | HGTGeneEnrichmentList Calculates the p-values for unranked... |
| HyperGTestGeneEnrichment | GmtFromModules |
| InitialCheckInputs | InitialCheckInputs |
| ModuleHyperLink | ModuleHyperLink Returns hyperlink to the html report of a... |
| MsigdbMapping | MsigdbMapping |
| readGMT | readGMT |
| RunHyperLink | RunHyperLink |
| scHBV_data | scHBV_data |
| scHCV_data | scHCV_data |
| TCGA_LIHC_data | TCGA_LIHC_data |
