HyperGTestGeneEnrichment: GmtFromModules

In broadinstitute/CommunityAMARETTO: CommunityAMARETTO: A Computational Tool for the Discovery of Shared and Distinct Regulatory Mechanisms Across Biological Systems

Description

GmtFromModules

Usage

HyperGTestGeneEnrichment(
  gmtfile1,
  gmtfile2,
  runname1,
  runname2,
  NrCores,
  ref.numb.genes = 45956
)

Arguments

gmtfile1	A gmtfilename that you want to compare
gmtfile2	A second gmtfile to compare with.
runname1	name of the first dataset.
runname2	name of the second dataset.
NrCores	Number of cores for parallel computing.
ref.numb.genes	The reference number of genes.

Value

Creates resultfile with p-values and padj when comparing two gmt files with a hyper geometric test.

Examples

try(
HyperGTestGeneEnrichment(gmtfile1, gmtfile2,
runname1, runname2,NrCores, ref.numb.genes=45956)
)

broadinstitute/CommunityAMARETTO documentation built on April 6, 2020, 10:44 p.m.