ModuleHyperLink: ModuleHyperLink Returns hyperlink to the html report of a...

In broadinstitute/CommunityAMARETTO: CommunityAMARETTO: A Computational Tool for the Discovery of Shared and Distinct Regulatory Mechanisms Across Biological Systems

Description

ModuleHyperLink Returns hyperlink to the html report of a given module and dataset.

Usage

ModuleHyperLink(
  Module,
  Run_Names,
  AMARETTOres,
  HTMLsAMARETTOlist,
  CopyAMARETTOReport,
  page = 1
)

Arguments

Module	Module Nr ex. 4
Run_Names	Run_Names ex. "TCGA_LIHC"
AMARETTOres	AMARETTO result object
HTMLsAMARETTOlist	list containing the hyperlink address to html report of each dataset.
CopyAMARETTOReport	Boolean to indicate if the AMARETTO reports needs to be copied in the AMARETTO report directory. In this way links are contained when moving the HTML directory.
page	1 for index pages and 2 for community pages

Value

Hyperlinks for Modules

Examples

try(ModuleHyperLink(Module,Run_Names,
   AMARETTOres,HTMLsAMARETTOlist,
   CopyAMARETTOReport,page=1))

broadinstitute/CommunityAMARETTO documentation built on April 6, 2020, 10:44 p.m.