InitialCheckInputs: InitialCheckInputs

In broadinstitute/CommunityAMARETTO: CommunityAMARETTO: A Computational Tool for the Discovery of Shared and Distinct Regulatory Mechanisms Across Biological Systems

Description

InitialCheckInputs

Usage

InitialCheckInputs(
  cAMARETTOresults,
  output_address,
  HTMLsAMARETTOlist,
  CopyAMARETTOReport,
  hyper_geo_reference,
  hyper_geo_reference_gp,
  hyper_geo_reference_cp
)

Arguments

cAMARETTOresults	cAMARETTOresults object
output_address	output_address
HTMLsAMARETTOlist	A list with AMARETTO reports to link with the Community AMARETTO report. If NULL, no links are added.
CopyAMARETTOReport	Boolean to indicate if the AMARETTO reports needs to be copied in the AMARETTO report directory. In this way links are contained when moving the HTML directory.
hyper_geo_reference	comupted tables or addresses to gmt files for functional enrichment
hyper_geo_reference_gp	comupted tables or addresses to gmt files for genetic perturbation
hyper_geo_reference_cp	comupted tables or addresses to gmt files for chemical perturbation

Value

RunInfo dataframe

Examples

try(
InitialCheckInputs(cAMARETTOresults,
 output_address="./",
 HTMLsAMARETTOlist,
 CopyAMARETTOReport=FALSE,
 hyper_geo_reference)
)

broadinstitute/CommunityAMARETTO documentation built on April 6, 2020, 10:44 p.m.