get_cooks_cutoff: Get Cook's distance cutoff
In bryancquach/omixjutsu: Utilities for omics analysis tasks
get_cooks_cutoff R Documentation
Get Cook's distance cutoff
Description
Determine Cook's distance outlier cutoff value.
Usage
get_cooks_cutoff(dds_fit, f_threshold = 99)
Arguments
dds_fit
A DESeqDataSet object after model fitting.
f_threshold
Percentile of the F distribution used as the cutoff for calling outliers.
Details
Uses differential expression regression model design to specify an F distribution and calculate
a value that equates to the user-specified F distribution percentile. This value can be used as
a Cook's distance cutoff above which features would be considered outliers.
Value
A Cook's distance value.
See Also
get_cooks_outliers, plot_cooks_per_sample
bryancquach/omixjutsu documentation built on Jan. 29, 2023, 3:47 p.m.
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| get_cooks_cutoff | R Documentation |
Get Cook's distance cutoff
Description
Determine Cook's distance outlier cutoff value.
Usage
get_cooks_cutoff(dds_fit, f_threshold = 99)
Arguments
dds_fit |
A DESeqDataSet object after model fitting. |
f_threshold |
Percentile of the F distribution used as the cutoff for calling outliers. |
Details
Uses differential expression regression model design to specify an F distribution and calculate a value that equates to the user-specified F distribution percentile. This value can be used as a Cook's distance cutoff above which features would be considered outliers.
Value
A Cook's distance value.
See Also
get_cooks_outliers, plot_cooks_per_sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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