plot_cooks_per_sample: Plot Cook's distance distributions per sample.

In bryancquach/omixjutsu: Utilities for omics analysis tasks

Plot Cook's distance distributions per sample.

Description

Visualizes Cook's distance distribution summary stats across all features for a sample.

Usage

plot_cooks_per_sample(
  dds_fit,
  point_size = 2.5,
  point_alpha = 1,
  cooks_cutoff = NULL,
  y_lim = NULL
)

Arguments

dds_fit	A DESeqDataSet object after model fitting.
point_alpha	Plot point color alpha value.
cooks_cutoff	Cook's distance cutoff value for calling outliers.
y_lim	y-axis lower and upper plot limit.
point_color	Plot point color.

Details

Uses Cook's distance values across all features and samples to create a plot with the 25th, 50th, and 75th percentiles of the Cook's distance distrubtion for each sample.

Value

A ggplot object.

See Also

get_cooks_cutoff

bryancquach/omixjutsu documentation built on Jan. 29, 2023, 3:47 p.m.