ihw_pval_comparison: Compare p-value transformations

In bryancquach/omixjutsu: Utilities for omics analysis tasks

Compare p-value transformations

Description

Plot IHW adjusted p-values to raw p-values or adjusted p-values using other methods.

Usage

ihw_pval_comparison(ihw_data, p_adjust = NULL, point_size = 1.5, alpha = 1)

Arguments

ihw_data	An ihwResult object.
p_adjust	A p-value adjustment compatible with the 'method' parameter in 'p.adjust'. If 'NULL' then no p-value adjustment is made.
point_size	Point size for plot.
alpha	Plot colors alpha value.

Details

Creates a scatterplot that compares IHW adjusted p-values to p-values adjusted using a different method (or simply the unadjusted p-values).

Value

A ggplot object.

See Also

Other ihw: ihw_diagnostic_plots(), ihw_partitioned_pval_weights(), ihw_pval_cdf(), ihw_pval_decision_boundary(), ihw_pval_ridges(), ihw_pval_scatter(), ihw_stratified_pval_hist()

bryancquach/omixjutsu documentation built on Jan. 29, 2023, 3:47 p.m.