plot_gc_content_hist: GC content histogram

In bryancquach/omixjutsu: Utilities for omics analysis tasks

GC content histogram

Description

Create a GC content by sample histogram.

Usage

plot_gc_content_hist(
  data,
  binsize = 2.5,
  labels = NULL,
  fill = rep("red4", length(data)),
  alpha = 0.25,
  ids = NULL,
  invert = F
)

Arguments

data	A list of data frames with data in the same format as fastqc returned by load_paired_end_qc_data.
binsize	A numeric value for the histogram bin widths.
labels	A vector of strings for legend labels corresponding to the data frames in data.
fill	A string. The fill color for histogram bars.
alpha	A numeric. The alpha level for histogram bars.
ids	A vector of rownames for subsetting data for plotting.
invert	A logical. Should ids be used for excluding rows from plotting instead?

Value

A ggplot object.

See Also

load_paired_end_qc_data

bryancquach/omixjutsu documentation built on Jan. 29, 2023, 3:47 p.m.