get_gencode_rrna_ids: Retrieve ribosomal RNA feature IDs
In bryancquach/omixjutsu: Utilities for omics analysis tasks
View source: R/gencode_utils.R
get_gencode_rrna_ids R Documentation
Retrieve ribosomal RNA feature IDs
Description
Gets ribosomal RNA feature IDs from a GENCODE GTF-format data frame.
Usage
get_gencode_rrna_ids(gtf, feature_type = c("transcript", "gene", "exon"))
Arguments
gtf
A data frame with data from an imported GENCODE GTF file.
feature_type
A string denoting the feature type for which to retrieve records. This
corresponds to the 3rd column values in a GTF file.
Value
A string vector with GENCODE IDs
bryancquach/omixjutsu documentation built on Jan. 29, 2023, 3:47 p.m.
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View source: R/gencode_utils.R
| get_gencode_rrna_ids | R Documentation |
Retrieve ribosomal RNA feature IDs
Description
Gets ribosomal RNA feature IDs from a GENCODE GTF-format data frame.
Usage
get_gencode_rrna_ids(gtf, feature_type = c("transcript", "gene", "exon"))
Arguments
gtf |
A data frame with data from an imported GENCODE GTF file. |
feature_type |
A string denoting the feature type for which to retrieve records. This corresponds to the 3rd column values in a GTF file. |
Value
A string vector with GENCODE IDs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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