per_sample_count_distribution: Plot per sample count distribution
In bryancquach/omixjutsu: Utilities for omics analysis tasks

per_sample_count_distribution.DESeqDataSet

R Documentation

Plot per sample count distribution

Description

Plot feature count distribution summary statistics per sample.

Usage

## S3 method for class 'DESeqDataSet'
per_sample_count_distribution(
  dds,
  normalized = T,
  point_size = 2.5,
  point_alpha = 1,
  y_lim = NULL
)

per_sample_count_distribution(object, ...)

## S3 method for class 'matrix'
per_sample_count_distribution(
  data,
  point_size = 2.5,
  point_alpha = 1,
  y_lim = NULL
)

## S3 method for class 'DGEList'
per_sample_count_distribution(
  dge_data,
  normalized = T,
  point_size = 2.5,
  point_alpha = 1,
  y_lim = NULL
)

Arguments

`normalized`	A boolean denoting whether the plotted counts should not be normalized (`FALSE`) or normalized by size/normalization factors (`TRUE`). factors.
`point_size`	Plot point size.
`point_alpha`	Plot point alpha value.
`y_lim`	Plot y-axis range.
`object`	A DESeqDataSet, DGEList, or numeric matrix object.