cds_to_se: Convert: 'CellDataSet' ==> 'SummarizedExperiment'

In bschilder/scKirby: Automated ingestion and conversion of various single-cell data formats.

Convert: CellDataSet ==> SummarizedExperiment

Description

Convert: CellDataSet ==> SummarizedExperiment

Usage

cds_to_se(
  obj,
  as_sce = FALSE,
  as_sparse = TRUE,
  as_delayedarray = FALSE,
  verbose = TRUE
)

Arguments

obj	A single-cell object supported by scKirby. See converters for a table of all supported conversions.
as_sce	Convert to a SingleCellExperiment format.
as_sparse	Convert to a sparseMatrix.
as_delayedarray	Convert to DelayedArray.
verbose	Print messages.

Examples

obj <- example_obj("cds")
obj2 <- cds_to_se(obj)

bschilder/scKirby documentation built on April 22, 2024, 12:13 a.m.