Files in bschilder/scKirby
Automated ingestion and conversion of various single-cell data formats.
.DS_Store
.Rbuildignore
.Rbuildignore (1)
.github/workflows/rworkflows.yml
.gitignore
.gitignore (1)
DESCRIPTION
NAMESPACE
NEWS.md
R/_docs.R
R/activate_conda.R
R/anndata_to_ctd.R
R/anndata_to_list.R
R/anndata_to_se.R
R/anndata_to_seurat.R
R/assign_cores.R
R/calc_cor.R
R/calc_snn.R
R/calc_specificity.R
R/cds_to_anndata.R
R/cds_to_list.R
R/cds_to_se.R
R/cds_to_seurat.R
R/check_annotlevels.R
R/check_keys.R
R/check_metadata_rownames.R
R/check_se_colnames.R
R/check_se_rownames.R
R/check_supported.R
R/check_varm.R
R/converters.R
R/ctd_to_se.R
R/ctd_to_seurat.R
R/dict_acronym.R
R/dict_class.R
R/dict_filetype.R
R/dict_output.R
R/dict_suffix.R
R/dimreduc_to_list.R
R/example_anndata.R
R/example_list.R
R/example_obj.R
R/fillna_sparse.R
R/get_assay_names.R
R/get_cor.R
R/get_n_elements.R
R/get_obs.R
R/get_obs_names.R
R/get_obsm.R
R/get_obsm_mofa.R
R/get_obsp.R
R/get_uns.R
R/get_var.R
R/get_var_names.R
R/get_variable_features.R
R/get_varm.R
R/get_varm_mofa.R
R/get_x.R
R/h5seurat_to_anndata.R
R/h5seurat_to_seurat.R
R/has_graph.R
R/hdf5_hard_save.R
R/infer_graph_key.R
R/ingest_data.R
R/is_class.R
R/is_ctd.R
R/is_filetype.R
R/is_installed.R
R/is_list.R
R/is_sparse_matrix.R
R/is_suffix.R
R/list_to_anndata.R
R/list_to_cds.R
R/list_to_dimreduc.R
R/list_to_se.R
R/list_to_seurat.R
R/load_rdata.R
R/loom_to_list.R
R/loom_to_scle.R
R/loom_to_se.R
R/loom_to_seurat.R
R/make_levels_dict.R
R/map_data.R
R/map_data_anndata.R
R/map_data_anndata_chunked.R
R/map_data_assays.R
R/map_data_h5seurat.R
R/map_data_matrix.R
R/map_data_rowdata.R
R/map_data_se.R
R/map_data_seurat.R
R/matrices_to_assayobjects.R
R/matrix_to_se.R
R/matrix_to_seurat.R
R/merge_anndata.R
R/merge_cds.R
R/merge_sce.R
R/merge_seurat.R
R/messager.R
R/messager_to.R
R/mofa_to_dimreduc.R
R/normalise.R
R/package.R
R/process_seurat.R
R/quantize_dt.R
R/quantize_matrix.R
R/quantize_vector.R
R/read_anndata.R
R/read_data.R
R/read_geo_files.R
R/read_h5.R
R/read_h5seurat.R
R/read_loom.R
R/read_matrix.R
R/read_matrix_dir.R
R/reimport_anndata.R
R/save_anndata.R
R/save_data.R
R/save_h5seurat.R
R/save_hdf5se.R
R/sce_to_se.R
R/scle_to_le.R
R/se_filepath.R
R/se_to_anndata.R
R/se_to_le.R
R/se_to_list.R
R/se_to_loom.R
R/se_to_sce.R
R/se_to_seurat.R
R/set_obs.R
R/set_obsp.R
R/set_uns.R
R/set_var.R
R/seurat1_to_list.R
R/seurat_to_anndata.R
R/seurat_to_cds.R
R/seurat_to_h5seurat.R
R/seurat_to_hdf5se.R
R/seurat_to_list.R
R/seurat_to_scle.R
R/seurat_to_se.R
R/standardise_obs.R
R/stopper.R
R/to_anndata.R
R/to_cds.R
R/to_dataframe.R
R/to_datatable.R
R/to_delayedarray.R
R/to_graph.R
R/to_list.R
R/to_loom.R
R/to_se.R
R/to_seurat.R
R/to_sparse.R
R/update_seurat.R
R/yeojohnson.R
README.Rmd
README.md
inst/.DS_Store
inst/hex/.DS_Store
inst/hex/buff_kirby.png
inst/hex/hex.png
inst/hex/hexSticker.Rmd
man/activate_conda.Rd
man/anndata_to_ctd.Rd
man/anndata_to_list.Rd
man/anndata_to_se.Rd
man/anndata_to_seurat.Rd
man/calc_cor.Rd
man/cds_to_anndata.Rd
man/cds_to_list.Rd
man/cds_to_se.Rd
man/cds_to_seurat.Rd
man/class_dict.Rd
man/converters.Rd
man/ctd_to_se.Rd
man/ctd_to_seurat.Rd
man/dimreduc_to_list.Rd
man/example_anndata.Rd
man/example_obj.Rd
man/get_cor.Rd
man/get_graphs.Rd
man/get_n_elements.Rd
man/get_obs.Rd
man/get_obs_names.Rd
man/get_obsm.Rd
man/get_uns.Rd
man/get_var.Rd
man/get_var_names.Rd
man/get_variable_features.Rd
man/get_varm.Rd
man/get_x.Rd
man/h5seurat_to_anndata.Rd
man/h5seurat_to_seurat.Rd
man/has_graph.Rd
man/ingest_data.Rd
man/is_class.Rd
man/is_installed.Rd
man/list_to_anndata.Rd
man/list_to_dimreduc.Rd
man/list_to_se.Rd
man/list_to_seurat.Rd
man/load_rdata.Rd
man/loom_to_list.Rd
man/loom_to_scle.Rd
man/loom_to_se.Rd
man/loom_to_seurat.Rd
man/map_data.Rd
man/map_data_anndata.Rd
man/map_data_h5seurat.Rd
man/map_data_matrix.Rd
man/map_data_se.Rd
man/map_data_seurat.Rd
man/matrices_to_assayobjects.Rd
man/matrix_to_se.Rd
man/matrix_to_seurat.Rd
man/merge_anndata.Rd
man/merge_sce.Rd
man/merge_seurat.Rd
man/messager.Rd
man/mofa_to_dro.Rd
man/output_dict.Rd
man/process_seurat.Rd
man/read_data.Rd
man/save_data.Rd
man/scKirby-package.Rd
man/sce_to_se.Rd
man/scle_to_le.Rd
man/se_to_anndata.Rd
man/se_to_le.Rd
man/se_to_list.Rd
man/se_to_loom.Rd
man/se_to_sce.Rd
man/se_to_seurat.Rd
man/set_graph.Rd
man/set_obs.Rd
man/set_uns.Rd
man/set_var.Rd
man/seurat1_to_list.Rd
man/seurat_to_anndata.Rd
man/seurat_to_cds.Rd
man/seurat_to_h5seurat.Rd
man/seurat_to_le.Rd
man/seurat_to_list.Rd
man/seurat_to_se.Rd
man/standardise_obs.Rd
man/stopper.Rd
man/to_anndata.Rd
man/to_delayedarray.Rd
man/to_graph.Rd
man/to_list.Rd
man/to_loom.Rd
man/to_se.Rd
man/to_sparse.Rd
man/update_seurat.Rd
scKirby.Rproj
tests/testthat.R
tests/testthat/test-anndata_to_ctd.R
tests/testthat/test-calc_cor.R
tests/testthat/test-get_cor.R
tests/testthat/test-is_class.R
tests/testthat/test-list_to_anndata.R
tests/testthat/test-map_data.R
tests/testthat/test-read_data.R
tests/testthat/test-set_obsp.R
tests/testthat/test-standardise_obs.R
tests/testthat/test-to_graph.R
tests/testthat/test-to_sparse.R
vignettes/.gitignore
vignettes/conda.Rmd
vignettes/scKirby.Rmd
