save_data: Save data

In bschilder/scKirby: Automated ingestion and conversion of various single-cell data formats.

Save data

Description

Save a variety of single-cell data formats.

Usage

save_data(
  obj,
  filetype = c("h5", "h5seurat", "h5ad", "rda", "rds", "anndata"),
  save_path = file.path(tempdir(), paste("scKirby_output", filetype, sep = ".")),
  quicksave_hdf5 = TRUE,
  overwrite = TRUE,
  verbose = TRUE
)

Arguments

obj	A single-cell data object, or a path to saved single-cell data.
filetype	The file format to write the object as.
save_path	Path to save the converted obj.
quicksave_hdf5	When filetype="h5", quickResaveHDF5SummarizedExperiment will be used to save the data.
overwrite	If a file of the same name exists, overwrite it.
verbose	Print messages.

Examples

obj <- example_obj("cds")
filepath <- save_data(obj)

bschilder/scKirby documentation built on Oct. 2, 2024, 10:16 p.m.