converters: Converters

In bschilder/scKirby: Automated ingestion and conversion of various single-cell data formats.

Converters

Description

Functions to convert one single-cell format to another.

Usage

converters()

to_seurat(
  obj,
  as_h5seurat = FALSE,
  update = TRUE,
  save_path = tempfile(fileext = ".h5seurat"),
  verbose = TRUE
)

Arguments

obj	A single-cell object supported by scKirby. See converters for a table of all supported conversions.
as_h5seurat	Convert to the h5Seurat class.
update	Ensure the object is updated to the latest version of Seurat.
save_path	Path to save the H5Seurat to.
verbose	Print messages.

Value

A Seurat or h5Seurat object.

Functions

• to_seurat(): Convert any single-cell object to Seurat or h5Seurat format.

Examples

map_dt <- converters()
obj <- example_obj("cds")
obj2 <- to_seurat(obj)

bschilder/scKirby documentation built on Oct. 2, 2024, 10:16 p.m.