get_obsm: Extract reductions
In bschilder/scKirby: Automated ingestion and conversion of various single-cell data formats.
get_obsm R Documentation
Extract reductions
Description
Extract dimensionality keys objects from any single-cell object class.
Usage
get_obsm(obj, keys = NULL, n = NULL, verbose = TRUE)
Arguments
obj
Object of class:
DimReduc
Seurat
AnnData
prcomp
CellDataSet
list
matrix/data.frame
keys
The keys of reductions to extract from.
n
The maximum number of elements to return from that list.
verbose
Print messages.
Value
A matrix of cell embeddings coordinates.
Examples
obj <- example_obj("cds")
obsm <- get_obsm(obj)
bschilder/scKirby documentation built on Oct. 2, 2024, 10:16 p.m.
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| get_obsm | R Documentation |
Extract reductions
Description
Extract dimensionality keys objects from any single-cell object class.
Usage
get_obsm(obj, keys = NULL, n = NULL, verbose = TRUE)
Arguments
obj |
Object of class:
|
keys |
The keys of reductions to extract from. |
n |
The maximum number of elements to return from that list. |
verbose |
Print messages. |
Value
A matrix of cell embeddings coordinates.
Examples
obj <- example_obj("cds")
obsm <- get_obsm(obj)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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