list_to_dimreduc: Convert: list ==> 'DimReducObject'

In bschilder/scKirby: Automated ingestion and conversion of various single-cell data formats.

Convert: list ==> DimReducObject

Description

Create a Seurat DimReducObject from embeddings and loadings.

Usage

list_to_dimreduc(obj, assay, key, ...)

Arguments

obj	A named list containing: obsm : Sample embeddings varm : Feature loadings stdev : Standard deviation (if applicable) for the dimensional reduction
assay	Assay to use.
key	Key to use (name of embedding).
...	Arguments passed on to SeuratObject::CreateDimReducObject embeddings A matrix with the cell embeddings loadings A matrix with the feature loadings projected A matrix with the projected feature loadings stdev Standard deviation (if applicable) for the dimensional reduction global Specify this as a global reduction (useful for visualizations) jackstraw Results from the JackStraw function misc list for the user to store any additional information associated with the dimensional reduction

bschilder/scKirby documentation built on Oct. 2, 2024, 10:16 p.m.