bschilder/scKirby
Automated ingestion and conversion of various single-cell data formats.

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239
Source code
159
Man pages
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bschilder/scKirby: Automated ingestion and conversion of various single-cell data formats.
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API

API for bschilder/scKirby
Automated ingestion and conversion of various single-cell data formats.

Global functions
activate_conda Man page Source code
anndata_to_ctd Man page Source code
anndata_to_list Man page Source code
anndata_to_se Man page Source code
anndata_to_seurat Man page Source code
assign_cores Source code
calc_cor Man page Source code
calc_snn Source code
calc_specificity Source code
cds_to_anndata Man page Source code
cds_to_list Man page Source code
cds_to_se Man page Source code
cds_to_seurat Man page Source code
check_annotlevels Source code
check_keys Source code
check_metadata_rownames Source code
check_se_colnames Source code
check_se_rownames Source code
check_supported Source code
check_varm Source code
class_dict Man page
converters Man page Source code
ctd_to_se Man page Source code
ctd_to_seurat Man page Source code
dict_acronym Source code
dict_class Source code
dict_filetype Source code
dict_output Source code
dict_suffix Source code
dimreduc_to_list Man page Source code
example_anndata Man page Source code
example_list Source code
example_obj Man page Source code
fillna_sparse Source code
get_assay_names Source code
get_cor Man page Source code
get_filepath_se Source code
get_graphs Man page
get_n_elements Man page Source code
get_obs Man page Source code
get_obs_names Man page Source code
get_obsm Man page Source code
get_obsm_mofa Source code
get_obsp Source code
get_uns Man page Source code
get_var Man page Source code
get_var_names Man page Source code
get_variable_features Man page Source code
get_varm Man page Source code
get_varm_mofa Source code
get_x Man page Source code
h5seurat_to_anndata Man page Source code
h5seurat_to_seurat Man page Source code
has_graph Man page Source code
hdf5_hard_save Source code
infer_graph_key Source code
ingest_data Man page Source code
is_class Man page Source code
is_ctd Source code
is_filetype Source code
is_installed Man page Source code
is_list Source code
is_sparse_matrix Source code
is_suffix Source code
list_to_anndata Man page Source code
list_to_cds Source code
list_to_dimreduc Man page Source code
list_to_se Man page Source code
list_to_seurat Man page Source code
load_rdata Man page Source code
loom_to_list Man page Source code
loom_to_scle Man page Source code
loom_to_se Man page Source code
loom_to_seurat Man page Source code
make_levels_dict Source code
map_data Man page Source code
map_data_anndata Man page Source code
map_data_anndata_chunked Source code
map_data_assays Source code
map_data_h5seurat Man page Source code
map_data_matrix Man page Source code
map_data_rowdata Source code
map_data_se Man page Source code
map_data_seurat Man page Source code
matrices_to_assayobjects Man page Source code
matrix_to_se Man page Source code
matrix_to_seurat Man page Source code
merge_anndata Man page Source code
merge_cds Source code
merge_sce Man page Source code
merge_seurat Man page Source code
messager Man page Source code
messager_to Source code
mofa_to_dimreduc Source code
mofa_to_dro Man page
normalise Source code
output_dict Man page
process_seurat Man page Source code
quantize_dt Source code
quantize_matrix Source code
quantize_vector Source code
read_anndata Source code
read_data Man page Source code
read_geo_files Source code
read_h5 Source code
read_h5seurat Source code
read_loom Source code
read_matrix Source code
read_matrix_dir Source code
reimport_anndata Source code
save_anndata Source code
save_data Man page Source code
save_h5seurat Source code
save_hdf5se Source code
scKirby Man page
scKirby-package Man page
sce_to_se Man page Source code
scle_to_le Man page Source code
se_to_anndata Man page Source code
se_to_le Man page Source code
se_to_list Man page Source code
se_to_loom Man page Source code
se_to_sce Man page Source code
se_to_seurat Man page Source code
set_graph Man page
set_obs Man page Source code
set_obsp Source code
set_uns Man page Source code
set_var Man page Source code
seurat1_to_list Man page Source code
seurat_to_anndata Man page Source code
seurat_to_cds Man page Source code
seurat_to_h5seurat Man page Source code
seurat_to_hdf5se Source code
seurat_to_le Man page Source code
seurat_to_list Man page Source code
seurat_to_se Man page Source code
standardise_obs Man page Source code
stopper Man page Source code
to_anndata Man page Source code
to_cds Source code
to_dataframe Source code
to_datatable Source code
to_delayedarray Man page Source code
to_graph Man page Source code
to_list Man page Source code
to_loom Man page Source code
to_se Man page Source code
to_seurat Man page Source code
to_sparse Man page Source code
update_seurat Man page Source code
yeojohnson Source code
bschilder/scKirby documentation built on April 22, 2024, 12:13 a.m.

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