to_anndata: To 'AnnData'

In bschilder/scKirby: Automated ingestion and conversion of various single-cell data formats.

To AnnData

Description

Convert any single-cell object to AnnData format.

Usage

to_anndata(
  obj,
  save_path = tempfile(fileext = ".h5ad"),
  reimport = FALSE,
  verbose = TRUE
)

Arguments

obj	A single-cell object supported by scKirby. See converters for a table of all supported conversions.
save_path	Path to save the H5Seurat to.
reimport	Save and re-import the AnnData object into R to ensure all data has been converted from Python-native to R-native objects (e.g. pandas data.frames vs. R data.frames).
verbose	Print messages.

Examples

obj <- example_obj("cds")
obj2 <- to_anndata(obj)

bschilder/scKirby documentation built on Oct. 2, 2024, 10:16 p.m.