add_variant_type: Generates a variant type table
In campbio/BAGEL: Novel Mutational Signature Analysis
Description
Usage
Arguments
Value
Examples
View source: R/annotate_variants.R
Description
Generates a variant type table
Usage
1
add_variant_type(tab)
Arguments
tab
Input variant table
Value
Returns the inputted variant table with variant type ("SBS", "DBS",
"INS", "DEL") added as an appended "Variant_Type" column
Examples
1
2
bay <- readRDS(system.file("testdata", "bagel.rds", package = "BAGEL"))
BAGEL:::add_variant_type(bay@variants)
campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.
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Description Usage Arguments Value Examples
View source: R/annotate_variants.R
Description
Generates a variant type table
Usage
1 | add_variant_type(tab)
|
Arguments
tab |
Input variant table |
Value
Returns the inputted variant table with variant type ("SBS", "DBS", "INS", "DEL") added as an appended "Variant_Type" column
Examples
1 2 | bay <- readRDS(system.file("testdata", "bagel.rds", package = "BAGEL"))
BAGEL:::add_variant_type(bay@variants)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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