create_sbs192_table: Uses a genome object to find context and generate standard...
In campbio/BAGEL: Novel Mutational Signature Analysis
Description
Usage
Arguments
Value
View source: R/standard_tables.R
Description
Uses a genome object to find context and generate standard SBS192 table
using transcript strand
Usage
1
create_sbs192_table(bay, g, strand_type, overwrite = FALSE)
Arguments
bay
Input samples
g
A BSgenome object indicating which genome
reference the variants and their coordinates were derived from.
strand_type
Transcript_Strand or Replication_Strand
overwrite
Overwrite existing count table
Value
Returns the created SBS192 count table object built using either
transcript strand or replication strand
campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.
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Description Usage Arguments Value
View source: R/standard_tables.R
Description
Uses a genome object to find context and generate standard SBS192 table using transcript strand
Usage
1 | create_sbs192_table(bay, g, strand_type, overwrite = FALSE)
|
Arguments
bay |
Input samples |
g |
A BSgenome object indicating which genome reference the variants and their coordinates were derived from. |
strand_type |
Transcript_Strand or Replication_Strand |
overwrite |
Overwrite existing count table |
Value
Returns the created SBS192 count table object built using either transcript strand or replication strand
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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