create_sbs192_table: Uses a genome object to find context and generate standard...

Description Usage Arguments Value

View source: R/standard_tables.R

Description

Uses a genome object to find context and generate standard SBS192 table using transcript strand

Usage

1
create_sbs192_table(bay, g, strand_type, overwrite = FALSE)

Arguments

bay

Input samples

g

A BSgenome object indicating which genome reference the variants and their coordinates were derived from.

strand_type

Transcript_Strand or Replication_Strand

overwrite

Overwrite existing count table

Value

Returns the created SBS192 count table object built using either transcript strand or replication strand


campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.