compare_cosmic_v3: Compare a result object to COSMIC V3 Signatures; Select exome...
In campbio/BAGEL: Novel Mutational Signature Analysis

Compare a result object to COSMIC V3 Signatures; Select exome or genome for SBS and only genome for DBS or Indel classes

compare_cosmic_v3(
  result,
  variant_class,
  sample_type,
  threshold = 0.9,
  result_name = deparse(substitute(result))
)

`result`	Result to compare
`variant_class`	Compare to SBS, DBS, or Indel
`sample_type`	exome (SBS only) or genome
`threshold`	threshold for similarity
`result_name`	title for plot user result signatures

Returns the comparisons

1 2	res <- readRDS(system.file("testdata", "res.rds", package = "BAGEL")) compare_cosmic_v3(res, "SBS", "genome", threshold = 0.8)

campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.

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