count_table-class: Object containing the count table matrices, their names and...
In campbio/BAGEL: Novel Mutational Signature Analysis

Description Slots

Object containing the count table matrices, their names and descriptions that we generated by provided and by user functions. These are used to discover and infer signatures and exposures.

name: A name that describes the type of table (e.g. "SBS96")
count_table: An array of counts with samples as the columns and motifs as the rows
annotation: A data.frame of annotations with three columns used for plotting: motif, mutation, and context
features: Original features used to generate the count_table
type: The mutation type of each feature, in case we need to plot or model they differently
color_variable: The variable used for plotting colors, selected from the annotation slot
color_mapping: The mapping of the annotations chosen by color_variable to color values for plotting
description: A summary table of the result objects in result_list a list of lists. The nested lists created combined (rbind) tables, and the tables at the first list level are modelled independantly. Combined tables must be named. list("tableA", comboTable = list("tableC", "tableD"))