compare_cosmic_v2: Compare a result object to COSMIC V2 SBS Signatures...
In campbio/BAGEL: Novel Mutational Signature Analysis
Description
Usage
Arguments
Value
Examples
View source: R/discovery_prediction.R
Description
Compare a result object to COSMIC V2 SBS Signatures (combination whole-exome
and whole-genome)
Usage
1
2
3
4
5
compare_cosmic_v2(
result,
threshold = 0.9,
result_name = deparse(substitute(result))
)
Arguments
result
Result to compare
threshold
threshold for similarity
result_name
title for plot user result signatures
Value
Returns the comparisons
Examples
1
2
res <- readRDS(system.file("testdata", "res.rds", package = "BAGEL"))
compare_cosmic_v2(res, threshold = 0.8)
campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.
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Description Usage Arguments Value Examples
View source: R/discovery_prediction.R
Description
Compare a result object to COSMIC V2 SBS Signatures (combination whole-exome and whole-genome)
Usage
1 2 3 4 5 | compare_cosmic_v2(
result,
threshold = 0.9,
result_name = deparse(substitute(result))
)
|
Arguments
result |
Result to compare |
threshold |
threshold for similarity |
result_name |
title for plot user result signatures |
Value
Returns the comparisons
Examples
1 2 | res <- readRDS(system.file("testdata", "res.rds", package = "BAGEL"))
compare_cosmic_v2(res, threshold = 0.8)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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