extract_variants_from_maf_file: Extracts variants from a maf file
In campbio/BAGEL: Novel Mutational Signature Analysis
Description
Usage
Arguments
Value
Examples
Description
Add Description - Aaron
Usage
1
extract_variants_from_maf_file(maf_file, extra_fields = NULL)
Arguments
maf_file
Location of maf file
extra_fields
Optionally extract additional columns from the
object. Default NULL.
Value
Returns a data.table of variants from a maf
Examples
1
2
3
maf_file <- system.file("testdata", "public_TCGA.LUSC.maf",
package = "BAGEL")
maf <- extract_variants_from_maf_file(maf_file = maf_file)
campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.
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Description Usage Arguments Value Examples
Description
Add Description - Aaron
Usage
1 | extract_variants_from_maf_file(maf_file, extra_fields = NULL)
|
Arguments
maf_file |
Location of maf file |
extra_fields |
Optionally extract additional columns from the
object. Default |
Value
Returns a data.table of variants from a maf
Examples
1 2 3 | maf_file <- system.file("testdata", "public_TCGA.LUSC.maf",
package = "BAGEL")
maf <- extract_variants_from_maf_file(maf_file = maf_file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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