annotate_transcript_strand: Add transcript strand annotation to SBS variants (defined in...
In campbio/BAGEL: Novel Mutational Signature Analysis
Description
Usage
Arguments
Value
Examples
View source: R/annotate_variants.R
Description
Add transcript strand annotation to SBS variants (defined in genes only)
Usage
1
annotate_transcript_strand(bay, genome_build, build_table = TRUE)
Arguments
bay
Input bagel
genome_build
Which genome build to use: hg19, hg38, or a custom TxDb
object
build_table
Automatically build a table from this annotation
Value
None
Examples
1
2
bay <- readRDS(system.file("testdata", "bagel.rds", package = "BAGEL"))
annotate_transcript_strand(bay, 19)
campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.
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Description Usage Arguments Value Examples
View source: R/annotate_variants.R
Description
Add transcript strand annotation to SBS variants (defined in genes only)
Usage
1 | annotate_transcript_strand(bay, genome_build, build_table = TRUE)
|
Arguments
bay |
Input bagel |
genome_build |
Which genome build to use: hg19, hg38, or a custom TxDb object |
build_table |
Automatically build a table from this annotation |
Value
None
Examples
1 2 | bay <- readRDS(system.file("testdata", "bagel.rds", package = "BAGEL"))
annotate_transcript_strand(bay, 19)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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