annotate_transcript_strand: Add transcript strand annotation to SBS variants (defined in...
In campbio/musicatk: Mutational Signature Comprehensive Analysis Toolkit
View source: R/annotate_variants.R
annotate_transcript_strand R Documentation
Add transcript strand annotation to SBS variants (defined in genes only)
Description
Add transcript strand annotation to SBS variants (defined in genes only)
Usage
annotate_transcript_strand(musica, genome_build, build_table = TRUE)
Arguments
musica
A musica object.
genome_build
Which genome build to use: hg19, hg38, or a custom TxDb
object
build_table
Automatically build a table from this annotation
Value
None
Examples
data(musica)
annotate_transcript_strand(musica, 19)
campbio/musicatk documentation built on May 9, 2024, 2:21 a.m.
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View source: R/annotate_variants.R
| annotate_transcript_strand | R Documentation |
Add transcript strand annotation to SBS variants (defined in genes only)
Description
Add transcript strand annotation to SBS variants (defined in genes only)
Usage
annotate_transcript_strand(musica, genome_build, build_table = TRUE)
Arguments
musica |
A |
genome_build |
Which genome build to use: hg19, hg38, or a custom TxDb object |
build_table |
Automatically build a table from this annotation |
Value
None
Examples
data(musica)
annotate_transcript_strand(musica, 19)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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