compare_cosmic_v2: Compare a result object to COSMIC V2 SBS Signatures...

View source: R/compare_results.R

compare_cosmic_v2R Documentation

Compare a result object to COSMIC V2 SBS Signatures (combination whole-exome and whole-genome)

Description

Compare a result object to COSMIC V2 SBS Signatures (combination whole-exome and whole-genome)

Usage

compare_cosmic_v2(
  result,
  threshold = 0.9,
  metric = "cosine",
  result_name = deparse(substitute(result)),
  decimals = 2,
  same_scale = FALSE
)

Arguments

result

A musica_result object.

threshold

threshold for similarity

metric

One of "cosine" for cosine similarity or "jsd" for 1 minus the Jensen-Shannon Divergence. Default "cosine".

result_name

title for plot user result signatures

decimals

Specifies rounding for similarity metric displayed. Default 2.

same_scale

If TRUE, the scale of the probability for each signature will be the same. If FALSE, then the scale of the y-axis will be adjusted for each signature. Default TRUE.

Value

Returns the comparisons

Examples

data(res)
compare_cosmic_v2(res, threshold = 0.7)

campbio/musicatk documentation built on July 14, 2024, 8:28 a.m.