compare_results: Compare two result files to find similar signatures

In campbio/musicatk: Mutational Signature Comprehensive Analysis Toolkit

Compare two result files to find similar signatures

Description

Compare two result files to find similar signatures

Usage

compare_results(
  result,
  other_result,
  threshold = 0.9,
  metric = "cosine",
  result_name = deparse(substitute(result)),
  other_result_name = deparse(substitute(other_result)),
  decimals = 2,
  same_scale = FALSE
)

Arguments

result	A musica_result object.
other_result	A second musica_result object.
threshold	threshold for similarity
metric	One of "cosine" for cosine similarity or "jsd" for 1 minus the Jensen-Shannon Divergence. Default "cosine".
result_name	title for plot of first result signatures
other_result_name	title for plot of second result signatures
decimals	Specifies rounding for similarity metric displayed. Default 2.
same_scale	If TRUE, the scale of the probability for each signature will be the same. If FALSE, then the scale of the y-axis will be adjusted for each signature. Default FALSE.

Value

Returns the comparisons

Examples

data(res)
compare_results(res, res, threshold = 0.8)

campbio/musicatk documentation built on May 9, 2024, 2:21 a.m.