create_sbs192_table: Uses a genome object to find context and generate standard...

In campbio/musicatk: Mutational Signature Comprehensive Analysis Toolkit

Uses a genome object to find context and generate standard SBS192 table using transcript strand

Description

Uses a genome object to find context and generate standard SBS192 table using transcript strand

Usage

create_sbs192_table(musica, g, strand_type, overwrite = FALSE)

Arguments

musica	Input samples
g	A BSgenome object indicating which genome reference the variants and their coordinates were derived from.
strand_type	Transcript_Strand or Replication_Strand
overwrite	Overwrite existing count table

Value

Returns the created SBS192 count table object built using either transcript strand or replication strand

campbio/musicatk documentation built on July 14, 2024, 8:28 a.m.