plot_Theta: Plot a Mutual Hazard Network

In cbg-ethz/TreeMHN: Joint inference of repeated evolutionary trajectories and patterns of clonal exclusivity from single-cell mutation trees

Plot a Mutual Hazard Network

Description

This function plots a Mutual Hazard Network by separating the diagonal entries from the off-diagonal entries.

Usage

plot_Theta(
  Theta,
  mutations = NULL,
  full = TRUE,
  sort_diag = TRUE,
  to_show = NULL
)

Arguments

Theta	An n-by-n matrix representing a Mutual Hazard Network.
mutations	A list of mutation names, which must be unique values. If no names are given, then the mutation IDs will be used.
full	A boolean flag indicating whether the full MHN is shown (default: TRUE). If not, then only mutations with non-zero off-diagonal entries will be shown.
sort_diag	A boolean flag indicating whether the rows and columns of the MHN are sorted based on the decreasing order of the diagonal entries (default: TRUE).
to_show	A vector indicating which rows and columns of the MHN are shown (default: NULL).

cbg-ethz/TreeMHN documentation built on Jan. 29, 2024, 1:29 p.m.