plot_next_mutations: Plot the next most probable mutational events

In cbg-ethz/TreeMHN: Joint inference of repeated evolutionary trajectories and patterns of clonal exclusivity from single-cell mutation trees

Plot the next most probable mutational events

Description

Given a particular tree and a Mutual Hazard Network, this function finds the next most probable mutational events.

Usage

plot_next_mutations(
  n,
  tree_df,
  Theta,
  mutations = NULL,
  tree_label = NULL,
  top_M = 5
)

Arguments

n	Number of mutational events.
tree_df	A tree in data frame format.
Theta	An n-by-n matrix representing a Mutual Hazard Network
mutations	A list of mutation names, which must be unique values. If no names are given, then the mutation IDs will be used.
tree_label	The title of the tree (Default: NULL).
top_M	Number of most probable mutational events to plot (Default: 5).

cbg-ethz/TreeMHN documentation built on Jan. 29, 2024, 1:29 p.m.