R/rc.run.msfinder.predict.R

In cbroeckl/csu.pmf.tools: a collection of features used internally at CSU PMF for non-targeted metabolomics data processing

# rc.run.msfinder <- function(
#   msfinder.dir = "/home/pmflab/apps/msfinder.3.52/",
#   input.dir  =  "/home/pmflab/RStor/Projects/20210701-KWEBB-KW-1044/TOF_T3_Pos/spectra/mat",
#   param.file = "/lab_data/pmf_lab/RStor/Software/MSFinder/MSFINDER.INI"
#   output.dir = "out"
# ) {
#   #  MsfinderConsoleApp.exe mssearch -i .\Data\ -o .\ -m .\MsfinderConsoleApp-Param.txt
#   system(
#     paste0(
#       msfinder.dir, "/MsfinderConsoleApp.exe",
#       " -i=",
#       input.dir, 
#       " -m ", param.file
#     )
#   )
#   
# }
#