Files in ccagc/QDNAseq

Quantitative DNA Sequencing for Chromosomal Aberrations

NEWS.md R/998.LGG150.R R/999.package.R R/AllClasses.R R/AllGenerics.R R/QDNAseqCopyNumbers-accessors.R R/QDNAseqReadCounts-accessors.R R/QDNAseqSignals-accessors.R R/addPhenodata.R R/applyFilters.R R/binReadCounts.R R/callBins.R R/compareToReference.R R/correctBins.R R/createBinAnnotations.R R/estimateCorrection.R R/exportBins.R R/getBinAnnotations.R R/highlightFilters.R R/logTransform.R R/makeCgh.R R/normalizeBins.R R/normalizeSegmentedBins.R R/plot-methods.R R/poolRuns.R R/sdDiffTrim.R R/segmentBins.R R/smoothOutlierBins.R R/utils.R R/vmsg.R README.md man/LGG150.Rd man/QDNAseq-defunct.Rd man/QDNAseq-package.Rd man/QDNAseqCopyNumbers.Rd man/QDNAseqReadCounts.Rd man/QDNAseqSignals.Rd man/addPhenodata.Rd man/applyFilters.Rd man/binReadCounts.Rd man/callBins.Rd man/compareToReference.Rd man/correctBins.Rd man/createBins.Rd man/estimateCorrection.Rd man/exportBins.Rd man/frequencyPlot.Rd man/getBinAnnotations.Rd man/highlightFilters.Rd man/isobarPlot.Rd man/makeCgh.Rd man/noisePlot.Rd man/normalizeBins.Rd man/normalizeSegmentedBins.Rd man/plot.Rd man/poolRuns.Rd man/segmentBins.Rd man/smoothOutlierBins.Rd revdep/README.md revdep/failures.md revdep/problems.md revdep/run.R tests/QDNAseq,copyneutral.R tests/QDNAseq,gain-copyneutral-gain.R tests/QDNAseq,parallel-reproducibility.R tests/QDNAseq.R tests/binReadCounts.R tests/poolRuns.R