shattered.eval: Evaluate true catastrophic events Evaluate shattered regions...

In ccbiolab/svpluscnv: svpluscnv: analysis and visualization of complex structural variation data

Description

Evaluate true catastrophic events Evaluate shattered regions based on interleaved breaks and breakpoint dispersion parameters in order to identify true catastrophic chromosomal alterations

Usage

shattered.eval(
  chromo.regs.obj,
  interleaved.cut = 0.5,
  dist.iqm.cut = 1e+05,
  verbose = TRUE
)

Arguments

chromo.regs.obj	(chromo.regs) An object of class chromo.regs
interleaved.cut	(numeric) the percentage of non interleaved structural variant calls
dist.iqm.cut	(numeric) interquantile average of the distance between breakpoints within a shattered region
verbose	(logical)

Value

an instance of the class 'chromo.regs' containing breakpoint mapping onto genes

ccbiolab/svpluscnv documentation built on Sept. 9, 2020, 4:52 a.m.