timecourse: Simulates the time course for a given model.

In cdiener/dycone: dycone - analyze the dynamic landscape of metabolome data

Description

Simulates the time course for a given model.

Usage

timecourse(x0, t, k, S)

Arguments

x0	Initial concentrations of metabolites.
t	A vector of monotonously increasing times where the simulation is evaluated.
k	The vector of kinetic constants used for simulation.
S	The stochiometric matrix of the model.

Value

A matrix containing the time in the first column and temporal concentrations of the metabolites in the following columns.

Examples

data(eryth)
S <- stoichiometry(eryth)
x0 <- runif(nrow(S))
names(x0) <- rownames(S)
k <- runif(ncol(S))
t <- seq(0, 100, by=5)
timecourse(x0, t, k, S)

cdiener/dycone documentation built on May 13, 2019, 2:41 p.m.