compute_scores: compute_scores

In charles-bernard/mage: Mine Associated Gene Expressions (from single-cell Rna Seq data)

Description

Computes the table of association and characterization scores

Usage

compute_scores(x, n.cores = 1)

Arguments

x	matrix: a gene expression matrix (rownames corresponding to genes and colnames to cells)
n.cores	integer: nb of cores to be used for parallel processing

Value

Returns a table with the following columns:

1:2

Names of the two genes whose assocation is being assessed

3

MIC score, i.e the strength of the association between the 2 genes

4:n

Characterization scores, informing about the "shape" of the association

charles-bernard/mage documentation built on May 14, 2019, 2 a.m.