sample: sample

In charles-bernard/mage: Mine Associated Gene Expressions (from single-cell Rna Seq data)

Description

Sample the table of scores or clusters of it according to different methods of selection

Usage

sample(x, partition = NULL, methods = "downsampling", target_ratio = 0.1,
  target_nb = NULL)

Arguments

x	data.frame, a table of scores
partition	vector containing the partition of table x. If partition is passed to this function, each cluster will be sampled instead of the whole table. Each element of the partition vector must be a cluster ID and length(partition) must be equal to nrow(x).
methods	method or vector of methods to be used for the sampling. Methods available: "downsampling" "lowsampling" "upsampling" "centroids" "medoids" See Details to have the description of the methods
target_ratio	percentage of gene pairs to be retained in x (if partition is NULL) or in each cluster of x (if partition is NOT NULL) argument target_ratio will be ignored if argument target_nb is provided
target_nb	number of gene pairs to be retained in x (if partition is NULL) or in each cluster of x (if partition is NOT NULL)

charles-bernard/mage documentation built on May 14, 2019, 2 a.m.