show_heatmap: show_heatmap
In charles-bernard/mage: Mine Associated Gene Expressions (from single-cell Rna Seq data)
Description
Show the heatmap of scores for each cluster in the partition
Usage
1
show_heatmap(x, partition, ix = NULL, pdf_filename = NULL)
Arguments
x
data.frame; the standardize table of scores (consider using standardize_scores function)
partition
vector containing the partition of the table x.
ix
boolean vector of indexes to which the heatmap must be reduced (sample output).
A hundred representative individuals by cluster (downsampling) should be enough to get a glimpse
of what the cluster looks like in term of profile of scores ...
ix is a recommanded argument for a large table of score (greater than 1000 individuals)
pdf_filename
path to a pdf file which must store the plot (optional)
charles-bernard/mage documentation built on May 14, 2019, 2 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Show the heatmap of scores for each cluster in the partition
Usage
1 | show_heatmap(x, partition, ix = NULL, pdf_filename = NULL)
|
Arguments
x |
data.frame; the standardize table of scores (consider using |
partition |
vector containing the partition of the table |
ix |
boolean vector of indexes to which the heatmap must be reduced (
|
pdf_filename |
path to a pdf file which must store the plot (optional) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.